E.coli

Note for the writer : YOU MUST HAVE EXPERIENCE in Computational Genomic to write this plan in appropriate way in master level thank you ALSO this paper is my midterm grade
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Instruction :

1. Introduction: Briefly describe the organism and its characteristics including gene numbers, please include a bibliography at the end of the document.

For E. coli. see http://www.ncbi.nlm.nih.gov/bioproject/PRJNA30031

Use italics for the scientific names and remember that E. coli is Escherichia coli Two pages maximum .

2. Methods (Two pages ):

- Describe the dataset, how many reads, characteristics (what chemistry what biology on it ) , source (SRA):

(you will find the information about dataset in ncbi website by searching in under SRA type in the search bar SRR016860 FOR E.coli)

- Genome assembly: What software are you going to use ?
(use AMOS for E. coli ) , and how ??

(see attached article about AMOS)


- Genome annotation: What software are you going to use: Glimmer.
(See paper attached )

3. Bibliography

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